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STRINGSTRING
Phatr13675 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13675" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13675Predicted protein; Belongs to the protein kinase superfamily (228 aa)    
Predicted Functional Partners:
CYCL1
Predicted protein; Belongs to the cyclin family (193 aa)
     
 
  0.966
Phatr47388
Transcription elongation factor SPT5 (1057 aa)
     
 
  0.913
Phatr15555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
 
  0.909
Phatr48763
Predicted protein (436 aa)
     
 
  0.891
Phatr27082
Predicted protein (133 aa)
     
   
  0.798
Phatr3295
Predicted protein (156 aa)
   
 
  0.776
Phatr13192
Predicted protein (74 aa)
     
      0.775
Phatr20574
Predicted protein (720 aa)
     
   
  0.694
Phatr44306
Predicted protein (865 aa)
     
 
  0.685
Phatr43359
Predicted protein (689 aa)
     
 
  0.679
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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