STRINGSTRING
Phatr13675 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13675" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13675Predicted protein (228 aa)    
Predicted Functional Partners:
Phatr47388
Predicted protein (1057 aa)
     
  0.894
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
  0.868
CYCL1
Predicted protein (193 aa)
     
  0.848
Phatr52709
Predicted protein (179 aa)
       
  0.823
CYCH1
Predicted protein (272 aa)
       
  0.814
Phatr36789
Predicted protein (341 aa)
       
  0.814
Phatr3295
Predicted protein (156 aa)
   
  0.793
CDKC1
Predicted protein (355 aa)
   
 
0.760
CDKC2
Predicted protein (461 aa)
       
0.737
Phatrdraft955
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)
     
  0.735
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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