STRINGSTRING
Phatr13834 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13834" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13834Predicted protein (172 aa)    
Predicted Functional Partners:
Phatr50624
Putative uncharacterized protein (603 aa)
       
  0.994
Phatr28482
Predicted protein (602 aa)
       
  0.990
Phatr28743
Predicted protein (203 aa)
       
 
  0.969
Phatr52285
Cleavage and polyadenylation specific factor (1001 aa)
     
  0.958
Phatr42753
Predicted protein (1678 aa)
       
  0.957
PAF1
PolyAdenylation factor subunit 1 (402 aa)
     
  0.955
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
       
 
  0.948
Phatr50645
Serine/threonine-protein phosphatase (332 aa)
       
    0.933
Phatr18899
Serine/threonine-protein phosphatase (327 aa)
       
    0.933
Phatr4700
Predicted protein (325 aa)
       
      0.913
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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