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STRINGSTRING
Phatr13835 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13835" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13835Predicted protein (369 aa)    
Predicted Functional Partners:
Phatr11703
Predicted protein (820 aa)
     
   
  0.773
Phatr46516
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1051 aa)
     
        0.769
Phatr8842
Predicted protein (379 aa)
     
        0.766
Phatr9235
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
        0.764
Phatr50326
Predicted protein (998 aa)
     
      0.759
PHATR_1682
Anthranilate synthase. anthranilate synthetase. chorismate lyase (439 aa)
     
        0.752
Phatr25666
Predicted protein (885 aa)
     
        0.740
Phatr18258
Predicted protein (743 aa)
     
        0.727
Phatr46012
Predicted protein (2229 aa)
     
        0.726
Phatr42570
Predicted protein (1267 aa)
     
        0.726
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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