STRINGSTRING
Phatr14090 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr14090" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr14090Predicted protein (219 aa)    
Predicted Functional Partners:
Phatr50132
Predicted protein (1477 aa)
     
  0.967
Phatr34493
Predicted protein (447 aa)
   
  0.778
Phatr21660
Predicted protein (2400 aa)
     
  0.747
RPA1
Replication protein a large 70 kD subunit (606 aa)
     
  0.714
Phatr50796
Predicted protein (457 aa)
     
  0.714
Phatr13520
Predicted protein (127 aa)
       
  0.712
Phatr25743
Predicted protein (414 aa)
   
  0.702
Phatr25184
Predicted protein (623 aa)
   
  0.702
Phatr20716
Predicted protein (138 aa)
       
  0.669
Phatr23959
Predicted protein; Binds the poly(A) tail of mRNA (605 aa)
       
  0.633
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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