STRINGSTRING
Phatr14149 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr14149" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr14149Predicted protein (239 aa)    
Predicted Functional Partners:
Phatr21538
Predicted protein; Involved in nucleolar processing of pre-18S ribosomal RNA (256 aa)
     
      0.805
Phatr7810
Predicted protein (98 aa)
     
        0.798
Phatr25549
Predicted protein (512 aa)
     
        0.798
Phatr19647
Predicted protein (354 aa)
     
        0.796
Phatr14145
Predicted protein (516 aa)
     
        0.765
Phatr44394
Predicted protein (668 aa)
     
        0.752
Phatr8777
Predicted protein (110 aa)
     
        0.711
SAS1
Regulator of chromatin silencing (624 aa)
     
        0.696
Phatr47058
Predicted protein (606 aa)
     
      0.684
Phatr2182
Predicted protein (360 aa)
     
      0.681
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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