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Phatr14401 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr14401" - Isocitrate lyase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr14401Isocitrate lyase (539 aa)    
Predicted Functional Partners:
MS
Malate synthase (553 aa)
 
  0.999
GOX
Glycolate oxidase (381 aa)
         
  0.907
PEPCK1
Phosphoenolpyruvate carboxykinase (612 aa)
   
   
  0.709
FBP
Fructose-1,6-bisphosphatase (341 aa)
     
   
  0.646
Phatr51720
Fumarate reductase flavoprotein (668 aa)
     
 
  0.641
ACC1
Acetyl-coa carboxylase (2092 aa)
   
   
  0.638
Phatr30145
Citrate synthase (471 aa)
     
   
  0.601
FBPC4
Fructose-1,6-bisphosphatase (352 aa)
     
   
  0.594
FBPC1
Fructose-1,6-bisphosphatase (376 aa)
     
   
  0.593
FBPC3
Fructose-1,6-bisphosphatase (349 aa)
     
   
  0.591
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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