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Phatr14762 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr14762" - Isocitrate dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr14762Isocitrate dehydrogenase (357 aa)    
Predicted Functional Partners:
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.917
MDH
Predicted protein (324 aa)
   
 
  0.865
Phatr30145
Citrate synthase (471 aa)
   
   
  0.789
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
       
  0.772
Phatr24739
Predicted protein (1594 aa)
       
  0.772
Phatr24772
Predicted protein (801 aa)
       
  0.769
OGD1
2-oxoglutarate dehydrogenase E1 component (1073 aa)
     
 
  0.708
Phatr13951
Predicted protein (450 aa)
     
  0.699
Phatr35625
Predicted protein (346 aa)
     
   
  0.676
IPMDH
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (416 aa)
   
 
  0.641
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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