STRINGSTRING
RabGDI protein (Phaeodactylum tricornutum) - STRING interaction network
"RabGDI" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RabGDIPredicted protein (446 aa)    
Predicted Functional Partners:
Rab11
Predicted protein (214 aa)
     
  0.975
Rab6
Predicted protein (236 aa)
     
 
  0.967
Phatrdraft998
Predicted protein (230 aa)
       
 
  0.875
PtRabX1
Predicted protein (230 aa)
       
 
  0.875
RabX2
Predicted protein (229 aa)
       
 
  0.875
Sec4
Predicted protein (207 aa)
       
 
  0.875
Rab18
Predicted protein (213 aa)
     
 
  0.848
Rab1b
Predicted protein (208 aa)
     
 
  0.848
Rab1a
Predicted protein (203 aa)
     
 
  0.848
Phatrdraft590
Predicted protein (334 aa)
     
  0.798
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (9%) [HD]