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Phatr14917 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr14917" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr14917Predicted protein (336 aa)    
Predicted Functional Partners:
Phatr1690
Predicted protein (495 aa)
       
  0.941
Phatr26837
Predicted protein (643 aa)
   
 
  0.939
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
         
  0.927
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
         
  0.927
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
         
  0.927
METH
Methionine synthase (1245 aa)
       
  0.906
GDCT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine (421 aa)
         
  0.904
Phatr23623
Predicted protein (300 aa)
 
     
  0.662
Phatr45701
Predicted protein (444 aa)
   
 
  0.584
Phatr12989
Predicted protein (363 aa)
   
 
  0.584
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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