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Phatr14945 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr14945" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr14945Predicted protein (196 aa)    
Predicted Functional Partners:
Phatr49392
Predicted protein (370 aa)
     
 
  0.799
Phatr14502
Predicted protein (177 aa)
       
 
  0.722
Rab18
Predicted protein (213 aa)
     
 
  0.660
Rab1b
Predicted protein (208 aa)
     
 
  0.660
Rab1a
Predicted protein (203 aa)
     
 
  0.660
Phatr55040
D-lactate dehydrogenase (506 aa)
 
            0.657
Rab11
Predicted protein (214 aa)
       
  0.601
Phatr8111
Predicted protein (99 aa)
       
      0.569
Rab2
Predicted protein (210 aa)
     
  0.540
Rab7
Predicted protein (237 aa)
       
 
  0.532
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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