STRINGSTRING
Phatr15121 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15121" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15121Predicted protein (450 aa)    
Predicted Functional Partners:
Phatr24748
Predicted protein; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (413 aa)
     
 
  0.974
Phatr12921
Predicted protein (240 aa)
       
 
  0.963
Phatr16560
Predicted protein (269 aa)
       
 
  0.954
Phatr37291
Predicted protein (248 aa)
       
 
  0.952
Phatr16766
Predicted protein (140 aa)
       
 
  0.932
Phatr50796
Predicted protein (457 aa)
     
  0.915
Phatrdraft509
Predicted protein (308 aa)
       
 
  0.879
Phatr17545
Predicted protein (261 aa)
     
  0.819
Phatr23959
Predicted protein; Binds the poly(A) tail of mRNA (605 aa)
     
  0.809
Phatr13682
Predicted protein; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (220 aa)
   
  0.795
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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