STRINGSTRING
Phatr15125 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15125" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15125Predicted protein (311 aa)    
Predicted Functional Partners:
GMD1
Gdp-mannose 4,6-dehydratase (363 aa)
 
  0.989
Phatr46656
Predicted protein (531 aa)
   
 
  0.691
Phatr46479
Translation initiation factor eif-2bgamma (758 aa)
   
 
  0.691
UGDH1
UDP-glucose 6-dehydrogenase (475 aa)
   
 
  0.623
GALE1
UDP-glucose 4-epimerase (358 aa)
     
  0.609
Phatr27190
Predicted protein (365 aa)
     
  0.609
SQD1
UDP-sulfoquinovose synthase, plastid (456 aa)
     
  0.609
Phatr12984
Predicted protein (96 aa)
     
  0.609
Phatr47245
Predicted protein (480 aa)
   
 
  0.606
Phatr45980
Predicted protein (348 aa)
   
 
  0.606
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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