STRINGSTRING
Phatr15180 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15180" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15180Predicted protein (309 aa)    
Predicted Functional Partners:
Phatr12269
Predicted protein (300 aa)
   
 
  0.741
Phatr47199
Predicted protein (323 aa)
 
   
  0.736
Phatr20833
Predicted protein (211 aa)
 
   
  0.720
Phatr12807
Predicted protein (326 aa)
   
 
  0.687
Phatr37858
Predicted protein (398 aa)
   
 
  0.687
Phatr2738
Predicted protein (235 aa)
   
 
  0.687
Phatr50804
Glycolate oxidase (431 aa)
       
  0.667
GOX
Glycolate oxidase (381 aa)
       
  0.667
PSY
Phytoene synthase (309 aa)
   
 
  0.652
Phatr13160
Predicted protein (314 aa)
   
 
  0.652
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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