• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr15180 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15180" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15180Predicted protein; Belongs to the FPP/GGPP synthase family (309 aa)    
Predicted Functional Partners:
Phatr16870
3-hydroxy-3-methylglutaryl coenzyme A reductase (367 aa)
   
 
  0.688
Phatr9634
Predicted protein (480 aa)
     
 
  0.662
Phatr12269
Predicted protein (300 aa)
   
   
  0.660
HDR
Hydroxymethylbutenyl diphosphate reductase; Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
   
 
  0.647
MPDC
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes (415 aa)
   
   
  0.642
Phatr49325
Predicted protein; Belongs to the FPP/GGPP synthase family (343 aa)
       
 
  0.632
Phatr38985
Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial; Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides; Belongs to the COQ4 family (254 aa)
     
   
  0.622
Phatr35064
Predicted protein (348 aa)
     
   
  0.617
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
     
   
  0.587
PSY
Phytoene synthase (309 aa)
   
 
  0.545
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (9%) [HD]