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Sar1B protein (Phaeodactylum tricornutum) - STRING interaction network
"Sar1B" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sar1BPredicted protein (174 aa)    
Predicted Functional Partners:
Phatr47010
Predicted protein (1133 aa)
     
  0.873
Sec23
Predicted protein (759 aa)
     
  0.870
Phatr13396
Predicted protein (680 aa)
     
  0.840
Phatr48220
Predicted protein (1041 aa)
     
  0.779
Phatr47270
Predicted protein (897 aa)
     
  0.749
SybE
Predicted protein (227 aa)
     
  0.688
Phatr9033
Predicted protein (268 aa)
     
  0.671
Sec13
Predicted protein (330 aa)
     
  0.646
Rab18
Predicted protein (213 aa)
     
 
  0.608
Rab1b
Predicted protein (208 aa)
     
 
  0.608
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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