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STRINGSTRING
Phatr15399 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15399" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15399Predicted protein (191 aa)    
Predicted Functional Partners:
Spc12
Signal peptidase 12 kDa subunit (78 aa)
     
 
  0.982
Phatr51280
Signal peptidase I (185 aa)
     
 
  0.957
Phatr18533
Predicted protein (172 aa)
     
   
  0.938
Phatr48430
Predicted protein (571 aa)
     
   
  0.820
Phatr48508
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (688 aa)
     
   
  0.775
Phatr14756
Predicted protein (308 aa)
     
   
  0.695
Phatr32237
Predicted protein (259 aa)
     
        0.573
Phatr43680
Predicted protein (1458 aa)
           
  0.535
Phatr34810
Predicted protein (314 aa)
     
   
  0.530
Phatr49630
Predicted protein (247 aa)
     
   
  0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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