STRINGSTRING
Phatr15422 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15422" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15422Predicted protein (240 aa)    
Predicted Functional Partners:
ARL1
Predicted protein (184 aa)
   
 
  0.917
Arf1
Predicted protein (184 aa)
       
  0.838
Rab11
Predicted protein (214 aa)
       
  0.753
Ras1
Predicted protein (191 aa)
       
  0.742
Rab2
Predicted protein (210 aa)
       
  0.742
Phatr7181
Predicted protein (122 aa)
 
            0.675
Rab18
Predicted protein (213 aa)
     
  0.595
Rab1b
Predicted protein (208 aa)
     
  0.595
Rab1a
Predicted protein (203 aa)
     
  0.595
COPgamma
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (910 aa)
     
  0.594
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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