STRINGSTRING
Phatr15423 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15423" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15423Predicted protein (367 aa)    
Predicted Functional Partners:
Phatr11740
Predicted protein (229 aa)
   
 
  0.977
CPS-II
Predicted protein (1542 aa)
   
 
  0.968
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
   
 
  0.968
Phatr35101
Predicted protein (570 aa)
   
  0.907
Phatr54983
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
  0.885
Phatr29660
Predicted protein (260 aa)
     
  0.869
Phatr29658
Predicted protein (259 aa)
     
  0.869
Phatr16490
Predicted protein (281 aa)
     
  0.869
Phatr15683
Predicted protein (249 aa)
     
  0.869
Phatr25183
Predicted protein (334 aa)
   
 
  0.867
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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