STRINGSTRING
Phatr15508 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15508" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15508Predicted protein (461 aa)    
Predicted Functional Partners:
Phatr50624
Putative uncharacterized protein (603 aa)
       
  0.959
Phatr45697
Predicted protein (1067 aa)
     
  0.879
Phatr28482
Predicted protein (602 aa)
     
  0.864
Phatr42753
Predicted protein (1678 aa)
     
  0.860
Phatr52285
Cleavage and polyadenylation specific factor (1001 aa)
     
  0.817
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
     
      0.807
Phatr8451
Predicted protein (76 aa)
     
  0.799
PAF1
PolyAdenylation factor subunit 1 (402 aa)
     
 
  0.776
Phatr38525
Predicted protein (665 aa)
     
  0.771
Phatr47094
Predicted protein (503 aa)
     
  0.669
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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