STRINGSTRING
Phatr15536 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15536" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15536Predicted protein (313 aa)    
Predicted Functional Partners:
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
       
  0.937
ACL
Atp-citrate synthase (1082 aa)
   
  0.921
Phatr13951
Predicted protein (450 aa)
       
  0.907
Phatr45239
Predicted protein (1097 aa)
     
 
  0.904
GltD
Synthase of glutamate synthase (580 aa)
       
  0.902
AAT_2
Aspartate aminotransferase (426 aa)
         
  0.901
AAT_1
Aspartate transaminase (435 aa)
         
  0.901
MDH
Predicted protein (324 aa)
     
  0.820
OGD1
2-oxoglutarate dehydrogenase E1 component (1073 aa)
         
  0.808
PYC2
Precursor of carboxylase pyruvate carboxylase (1264 aa)
         
  0.803
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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