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Phatr15619 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15619" - 60S ribosomal protein L13 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1561960S ribosomal protein L13 (171 aa)    
Predicted Functional Partners:
Phatr46735
Predicted protein (163 aa)
     
  0.998
Phatr23324
Predicted protein (176 aa)
     
  0.998
Phatr19615
Predicted protein (121 aa)
     
  0.998
Phatr50886
Predicted protein (145 aa)
     
  0.998
Phatr43840
Predicted protein (110 aa)
     
  0.998
Phatr30660
Predicted protein (273 aa)
     
  0.998
Phatr33660
Predicted protein (253 aa)
     
  0.998
Phatr43162
Predicted protein (146 aa)
     
    0.998
Phatr18859
60S ribosomal protein L36 (108 aa)
     
  0.998
Phatr48699
Predicted protein (217 aa)
     
  0.998
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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