STRINGSTRING
Phatr15625 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15625" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15625Predicted protein (335 aa)    
Predicted Functional Partners:
Phatr9137
Predicted protein (114 aa)
 
  0.985
Phatr10532
Predicted protein (167 aa)
 
  0.960
Phatr21868
Predicted protein (186 aa)
       
    0.911
RNAP-II_1
Predicted protein (319 aa)
   
 
  0.818
Phatr13566
Predicted protein (320 aa)
       
  0.815
Phatr47430
Predicted protein (125 aa)
         
  0.814
Phatr12779
Predicted protein (89 aa)
         
  0.814
Phatr44961
Predicted protein (682 aa)
 
   
  0.811
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
       
  0.807
RNAP-II_2
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1211 aa)
       
  0.807
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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