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RpoT protein (Phaeodactylum tricornutum) - STRING interaction network
"RpoT" - DNA-directed RNA polymerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpoTDNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (576 aa)    
Predicted Functional Partners:
Phatr3351
Predicted protein (281 aa)
     
  0.630
Phatr19122
Predicted protein (322 aa)
     
  0.630
Phatr47936
Predicted protein (2798 aa)
       
      0.580
Phatr11441
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1212 aa)
     
   
  0.541
Phatr6025
Predicted protein (147 aa)
         
  0.537
Phatr37272
Predicted protein (351 aa)
         
  0.537
Phatr24886
Predicted protein (200 aa)
         
  0.537
Phatr16581
Predicted protein (133 aa)
         
  0.537
Phatr12674
Predicted protein (90 aa)
         
  0.537
Phatr11286
Predicted protein (75 aa)
         
  0.537
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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