STRINGSTRING
Phatr15884 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15884" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15884Predicted protein (290 aa)    
Predicted Functional Partners:
Phatr9619
Predicted protein (408 aa)
         
  0.533
Phatr54168
Annotation not available (509 aa)
         
  0.533
Phatr42361
Predicted protein (380 aa)
         
  0.533
Phatr14995
Predicted protein (316 aa)
         
  0.533
Phatr14426
Predicted protein (288 aa)
         
  0.533
Phatr14125
Monogalactosyldiacylglycerol synthase (394 aa)
         
  0.533
Phatr34526
Predicted protein (440 aa)
 
       
  0.521
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.481
Phatr12107
Predicted protein (460 aa)
           
  0.430
Phatr9724
Predicted protein (371 aa)
   
   
  0.428
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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