STRINGSTRING
Phatr15968 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15968" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15968Predicted protein (1387 aa)    
Predicted Functional Partners:
Phatr1769
Predicted protein (395 aa)
 
 
  0.985
Phatr29736
Uricase (247 aa)
   
 
  0.976
Phatr15948
Predicted protein (262 aa)
         
  0.954
Phatr49522
5-hydroxyisourate hydrolase (299 aa)
 
 
    0.903
Phatr35566
Predicted protein (222 aa)
         
    0.900
Phatr29702
Predicted protein (878 aa)
         
  0.749
Phatr49924
Predicted protein (564 aa)
   
 
    0.652
Phatr40052
Predicted protein (377 aa)
 
          0.646
Phatr49782
Predicted protein (227 aa)
   
 
    0.630
Phatr7208
Predicted protein (123 aa)
   
 
    0.626
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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