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STRINGSTRING
Phatr15980 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr15980" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15980Predicted protein (119 aa)    
Predicted Functional Partners:
CHLH
Protoporphyrin IX magnesium chelatase, subunit H (1343 aa)
   
   
  0.946
Phatr33017
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX; Belongs to the Mg-chelatase subunits D/I family (711 aa)
   
   
  0.929
HemA
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family (512 aa)
     
   
  0.913
HY2
Predicted protein (342 aa)
   
   
  0.835
Phatr12807
Predicted protein (326 aa)
   
   
  0.827
Phatr31683
Predicted protein (426 aa)
   
   
  0.807
Phatr26952
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (421 aa)
     
   
  0.801
chlM
Magnesium-protoporphyrin IX methyltransferase (258 aa)
   
   
  0.613
Phatr44748
Predicted protein (132 aa)
     
   
  0.576
Phatr11022
Predicted protein (366 aa)
   
        0.567
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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