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STRINGSTRING
Phatr16021 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16021" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16021Predicted protein (160 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
         
  0.861
Phatr9259
Predicted protein (92 aa)
   
 
  0.759
Phatr50886
Predicted protein (145 aa)
   
 
  0.740
Phatr30486
Predicted protein; Belongs to the universal ribosomal protein uS13 family (146 aa)
   
 
  0.735
Phatr11799
Predicted protein (84 aa)
     
 
  0.685
Phatr51291
Predicted protein (121 aa)
   
 
  0.677
Phatr19025
Predicted protein (205 aa)
   
 
  0.671
rpl2
Predicted protein (257 aa)
   
 
  0.667
rps19
Predicted protein; Belongs to the universal ribosomal protein uS19 family (147 aa)
   
 
  0.667
Phatr13682
Predicted protein (220 aa)
   
 
  0.666
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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