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hemE protein (Phaeodactylum tricornutum) - STRING interaction network
"hemE" - Uroporphyrinogen decarboxylase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemEUroporphyrinogen decarboxylase (366 aa)    
Predicted Functional Partners:
PPO
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX (520 aa)
   
 
  0.986
HemD
Uroporphyrinogen-iii synthase (296 aa)
   
 
  0.982
HemF_3
Coproporphyrinogen oxidase (292 aa)
   
 
  0.979
HemF_1
Coproporphyrinogen III oxidase (304 aa)
   
 
  0.976
HemF_2
Coproporphyrinogen oxidase. coproporphyrinogen III oxidase. coproporphyrinogenase (292 aa)
   
 
  0.961
hemC
Hydroxymethylbilane synthase (329 aa)
 
  0.957
Phatr12925
Predicted protein; Belongs to the precorrin methyltransferase family (255 aa)
       
  0.931
Phatr26952
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (421 aa)
 
   
  0.905
HemA
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family (512 aa)
   
   
  0.839
HemE_2
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family (409 aa)
   
   
0.825
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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