STRINGSTRING
Phatr16157 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16157" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16157Predicted protein (175 aa)    
Predicted Functional Partners:
Phatr45509
Predicted protein (723 aa)
   
 
  0.594
Phatr30334
Predicted protein (645 aa)
       
      0.449
Phatr12174
Predicted protein (585 aa)
       
      0.449
Phatr6789
Predicted protein (132 aa)
     
 
  0.444
Phatr49679
Predicted protein (430 aa)
     
 
  0.444
Phatr49040
Predicted protein (248 aa)
     
 
  0.444
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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