STRINGSTRING
Phatr16430 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16430" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16430Predicted protein (475 aa)    
Predicted Functional Partners:
Phatr17772
Predicted protein (1313 aa)
     
 
  0.643
Phatr25204
Predicted protein (598 aa)
       
  0.591
Phatr51720
Fumarate reductase flavoprotein (668 aa)
   
 
  0.549
Phatr19000
Farnesyltranstransferase (337 aa)
         
  0.541
Phatr16615
Predicted protein (325 aa)
         
  0.541
Phatr15180
Predicted protein (309 aa)
         
  0.541
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
   
  0.522
Phatr24739
Predicted protein (1594 aa)
   
   
  0.522
ACL
Atp-citrate synthase (1082 aa)
     
   
  0.520
ACPZ
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (127 aa)
     
 
  0.515
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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