STRINGSTRING
Phatr16471 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16471" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16471Predicted protein (207 aa)    
Predicted Functional Partners:
Phatr49879
Predicted protein (253 aa)
   
        0.587
Phatr36377
Predicted protein (413 aa)
   
        0.548
Phatr40135
Predicted protein (461 aa)
   
        0.541
Phatr46071
Predicted protein (180 aa)
   
        0.512
Phatr33845
Predicted protein (315 aa)
   
        0.511
Phatr3296
Predicted protein (380 aa)
   
        0.503
Phatr42329
Predicted protein (238 aa)
   
        0.495
Phatr35336
Predicted protein (125 aa)
   
          0.492
Phatrdraft1025
Tocopherol cyclase (515 aa)
   
          0.476
Phatr7660
Predicted protein (88 aa)
   
          0.476
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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