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STRINGSTRING
Phatr16499 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16499" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16499Predicted protein (378 aa)    
Predicted Functional Partners:
Phatr42282
Predicted protein (383 aa)
     
   
  0.948
Phatr52316
Aspartokinase; Belongs to the aspartokinase family (468 aa)
 
   
  0.938
Phatr25956
Predicted protein (272 aa)
   
   
  0.871
Phatr28056
Predicted protein (757 aa)
   
   
  0.858
Phatr10757
Predicted protein (345 aa)
   
   
  0.764
Phatr19901
Predicted protein (900 aa)
   
   
  0.717
Phatr12925
Predicted protein; Belongs to the precorrin methyltransferase family (255 aa)
   
   
  0.693
Phatr21030
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (390 aa)
     
        0.690
Phatr46461
Predicted protein (426 aa)
   
   
  0.634
Phatr47067
Predicted protein (1237 aa)
   
   
  0.621
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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