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Phatr16725 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16725" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16725Predicted protein (115 aa)    
Predicted Functional Partners:
Phatr42826
Predicted protein (1192 aa)
     
 
  0.743
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
 
  0.732
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
 
  0.732
RPA2
Predicted protein (270 aa)
     
      0.658
Phatr44751
Predicted protein (376 aa)
     
 
  0.627
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
 
  0.612
Phatr24915
Predicted protein (791 aa)
     
 
  0.612
Phatr10282
Predicted protein (614 aa)
     
 
  0.612
Phatr33633
Predicted protein (818 aa)
     
 
  0.583
Rad22
Predicted protein (468 aa)
       
      0.551
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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