STRINGSTRING
Phatr16827 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16827" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16827Predicted protein (475 aa)    
Predicted Functional Partners:
Phatr47199
Predicted protein (323 aa)
   
 
  0.656
Phatr46770
Predicted protein (412 aa)
   
 
  0.656
Phatr44851
Predicted protein (249 aa)
   
 
  0.656
Phatr20833
Predicted protein (211 aa)
   
 
  0.656
Phatr9984
Predicted protein (249 aa)
   
  0.632
chlM
Magnesium-protoporphyrin IX methyltransferase (258 aa)
   
  0.632
PHATR_3140
Predicted protein (196 aa)
              0.495
ZEP2
Precursor of protein zeaxanthin epoxidase-like protein (192 aa)
     
 
  0.412
Phatr48932
Predicted protein (721 aa)
     
 
  0.412
ZEP1
Zeaxanthin epoxidase (565 aa)
     
 
  0.412
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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