STRINGSTRING
Phatr16856 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16856" - Beta-glucosidase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16856Beta-glucosidase (441 aa)    
Predicted Functional Partners:
Phatr54569
Predicted protein (558 aa)
       
  0.935
Phatr49610
Exo-1,3-beta-glucosidase (620 aa)
       
  0.935
Phatr26742
Beta-glucosidase (929 aa)
       
  0.833
Phatr47992
Predicted protein (432 aa)
       
  0.635
Phatr45826
Predicted protein (238 aa)
       
      0.530
Phatr29758
Predicted protein (895 aa)
       
 
  0.471
Phatr29309
Predicted protein (842 aa)
       
 
  0.471
Phatr13602
Predicted protein (620 aa)
       
 
  0.471
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.456
Phatr29702
Predicted protein (878 aa)
           
  0.449
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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