STRINGSTRING
Phatr16870 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16870" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16870Predicted protein (367 aa)    
Predicted Functional Partners:
Phatr16649
Predicted protein (461 aa)
   
 
  0.979
MK
Mevalonate kinase (490 aa)
       
  0.971
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.643
Phatr12972
Predicted protein (247 aa)
   
   
  0.637
Phatr12533
Predicted protein (222 aa)
   
   
  0.637
Phatr49325
Predicted protein (343 aa)
   
 
  0.596
Phatr16932
Predicted protein (361 aa)
       
 
  0.580
MPDC
MPDC mevalonate diphosphate decarboxylase (415 aa)
   
   
  0.580
Phatr45947
Predicted protein (403 aa)
   
   
  0.559
Phatr10852
Predicted protein (167 aa)
     
 
  0.556
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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