STRINGSTRING
Phatr16875 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16875" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16875Predicted protein (164 aa)    
Predicted Functional Partners:
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
  0.967
Phatr45431
Predicted protein (1158 aa)
   
  0.920
Phatr15937
Predicted protein (154 aa)
   
0.914
Phatr51026
Histone deacetylase (426 aa)
   
  0.860
Phatr49800
Histone deacetylase (426 aa)
   
  0.860
Phatr13566
Predicted protein (320 aa)
       
  0.852
Phatr46372
Absent, small, or homeotic discs 2 (687 aa)
     
  0.842
Phatr23077
Predicted protein (379 aa)
     
  0.827
H3-1a
Histone H3 (136 aa)
       
  0.812
Phatr50695
Histone H3 (136 aa)
       
  0.812
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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