STRINGSTRING
Phatr1690 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr1690" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1690Predicted protein (495 aa)    
Predicted Functional Partners:
PHATR_7646
Predicted protein (137 aa)
   
  0.992
Phatr39306
Predicted protein (296 aa)
   
 
  0.988
Phatr17523
Predicted protein (409 aa)
   
 
  0.988
Phatr9348
Predicted protein (172 aa)
   
  0.985
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
 
  0.983
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
   
  0.982
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
   
  0.982
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
   
  0.982
Phatr48414
Predicted protein (593 aa)
   
  0.978
Phatr46855
Predicted protein (245 aa)
   
  0.977
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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