STRINGSTRING
Phatr16955 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16955" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16955Predicted protein (231 aa)    
Predicted Functional Partners:
ZDS
Zeta-carotene desaturase (495 aa)
   
 
  0.779
PDS2
Phytoene desaturase (589 aa)
   
 
  0.757
PDS1
Phytoene dehydrogenase (597 aa)
   
 
  0.717
Phatr15980
Predicted protein (119 aa)
   
          0.524
CRTISO5
CRTISO5 carotenoid isomerase 5,phytoene dehydrogenase-related protein (530 aa)
         
  0.523
CRTISO3
Carotenoid isomerase (595 aa)
         
  0.523
CRTISO2
Carotenoid isomerase (635 aa)
         
  0.523
CRTISO1
Carotenoid isomerase (633 aa)
         
  0.523
CRTISO4
Carotenoid isomerase (598 aa)
         
  0.523
Phatr11792
Predicted protein (278 aa)
   
          0.518
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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