STRINGSTRING
Phatr16987 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr16987" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16987Predicted protein (404 aa)    
Predicted Functional Partners:
Phatr45989
Predicted protein (1008 aa)
     
 
  0.946
Phatr13192
Predicted protein (74 aa)
     
      0.945
Phatr35766
Predicted protein (828 aa)
     
      0.827
Phatr10722
Predicted protein (153 aa)
   
   
  0.686
Phatr26975
Predicted protein; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (701 aa)
     
 
  0.657
Phatr14161
Helicase_3 (540 aa)
   
 
0.651
Phatr50326
Predicted protein (998 aa)
     
 
  0.624
Phatr16281
Predicted protein (84 aa)
     
      0.617
Phatr522
Predicted protein (743 aa)
     
      0.612
Phatr47365
Predicted protein (603 aa)
   
0.610
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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