STRINGSTRING
Phatr17172 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr17172" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr17172Predicted protein (551 aa)    
Predicted Functional Partners:
rpl14
Predicted protein (143 aa)
       
 
  0.802
Phatr19025
Predicted protein (205 aa)
     
 
  0.772
Phatr14535
Predicted protein (102 aa)
     
 
  0.756
Phatr11032
Predicted protein (115 aa)
     
 
  0.756
Phatr28359
Predicted protein (229 aa)
     
 
  0.753
Phatr14915
Predicted protein (200 aa)
     
 
  0.753
Phatr21922
Predicted protein (306 aa)
 
   
  0.583
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.568
Phatrdraft1331
Predicted protein (548 aa)
 
   
  0.546
Phatr1719
Predicted protein (415 aa)
 
   
  0.544
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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