STRINGSTRING
Phatr1719 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr1719" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1719Predicted protein (415 aa)    
Predicted Functional Partners:
Phatr23324
Predicted protein (176 aa)
     
 
  0.658
Phatr14915
Predicted protein (200 aa)
   
 
  0.651
rpl2
Predicted protein (257 aa)
       
 
  0.650
rpl14
Predicted protein (143 aa)
       
 
  0.642
Phatr28359
Predicted protein (229 aa)
     
 
  0.642
Phatr12292
50S ribosomal protein L33 (57 aa)
       
      0.641
Phatr11799
Predicted protein (84 aa)
       
      0.641
Phatr14535
Predicted protein (102 aa)
       
 
  0.639
Phatr11032
Predicted protein (115 aa)
       
 
  0.639
Phatr8720
Predicted protein (116 aa)
       
 
  0.633
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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