STRINGSTRING
Phatr17198 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr17198" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr17198Predicted protein (1052 aa)    
Predicted Functional Partners:
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.944
Phatr11088
Predicted protein (1086 aa)
   
  0.875
Phatr26837
Predicted protein (643 aa)
 
  0.874
Phatr29029
Predicted protein (574 aa)
 
  0.871
Phatr27385
Predicted protein (697 aa)
 
  0.846
Phatr16963
Glutaminyl-trna synthetase (568 aa)
 
  0.846
Phatr29824
Predicted protein (1177 aa)
     
 
0.845
Phatr17772
Predicted protein (1313 aa)
   
   
  0.842
GluRS_1
Glutamate-trna ligase (523 aa)
 
  0.838
GluRS_2
Glutamyl-trna synthase (588 aa)
   
  0.835
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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