STRINGSTRING
Phatr1758 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr1758" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1758Predicted protein (374 aa)    
Predicted Functional Partners:
Phatr21794
Predicted protein (346 aa)
     
 
  0.968
Phatr10628
Predicted protein (575 aa)
       
 
0.845
Phatr16032
Predicted protein (422 aa)
     
 
  0.783
Phatr2845
Predicted protein (268 aa)
   
 
0.686
Phatr9413
Predicted protein (325 aa)
   
 
0.628
Phatr3730
Predicted protein (300 aa)
     
 
0.594
Phatr49558
Predicted protein (1106 aa)
     
 
  0.576
Phatr13617
Predicted protein (201 aa)
   
 
  0.547
Phatr42978
Predicted protein (632 aa)
     
 
  0.514
Phatr5235
Predicted protein (263 aa)
     
 
  0.511
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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