STRINGSTRING
SybA protein (Phaeodactylum tricornutum) - STRING interaction network
"SybA" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SybAPredicted protein (226 aa)    
Predicted Functional Partners:
Phatr13691
Predicted protein (121 aa)
     
  0.968
Phatr9033
Predicted protein (268 aa)
     
  0.965
SybE
Predicted protein (227 aa)
     
 
  0.955
SytB
Predicted protein (260 aa)
     
  0.898
SNAP
Predicted protein (313 aa)
     
  0.882
GOS
Predicted protein (223 aa)
     
  0.855
Phatr42768
Predicted protein (599 aa)
     
  0.823
Phatr3366
Predicted protein (225 aa)
 
 
  0.823
Phatr13383
Predicted protein (164 aa)
 
 
  0.823
Phatr12620
Predicted protein (532 aa)
     
  0.823
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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