STRINGSTRING
Phatr17728 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr17728" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr17728Predicted protein (509 aa)    
Predicted Functional Partners:
Phatr12311
Predicted protein (128 aa)
 
 
  0.740
Phatr45431
Predicted protein (1158 aa)
     
  0.646
Phatr44966
Predicted protein (822 aa)
     
 
  0.583
Phatr46863
Predicted protein (1597 aa)
     
 
  0.572
Phatr13520
Predicted protein (127 aa)
       
      0.551
Phatr46007
Predicted protein (773 aa)
   
 
0.545
NURF-140
Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit (1023 aa)
   
 
0.545
Phatr54869
Predicted protein (445 aa)
     
      0.544
Phatr45153
Predicted protein (523 aa)
     
 
  0.536
ARP
Actin related protein (463 aa)
     
 
  0.536
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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