STRINGSTRING
Phatr18103 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18103" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18103Predicted protein (214 aa)    
Predicted Functional Partners:
Phatr42276
Predicted protein (1263 aa)
   
 
    0.789
Phatr45509
Predicted protein (723 aa)
   
   
  0.710
Phatr29887
Predicted protein (564 aa)
   
 
  0.678
Phatrdraft487
Predicted protein (355 aa)
   
      0.547
Phatr8975
Predicted protein (350 aa)
   
      0.547
Phatr36821
Predicted protein (386 aa)
   
      0.547
Phatr26649
Predicted protein; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (512 aa)
     
   
  0.517
Phatr2217
Predicted protein (364 aa)
     
   
  0.517
Phatr15730
Predicted protein (442 aa)
     
   
  0.517
Phatr47067
Predicted protein (1237 aa)
         
  0.464
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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