STRINGSTRING
Phatr18217 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18217" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18217Predicted protein (326 aa)    
Predicted Functional Partners:
Phatr54743
Predicted protein (347 aa)
 
   
0.940
Phatr46764
Predicted protein (683 aa)
       
 
  0.901
Phatrdraft1638
Predicted protein (548 aa)
       
      0.870
Phatr14518
Predicted protein (279 aa)
 
            0.579
Phatr48587
Predicted protein; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (300 aa)
       
      0.547
Phatr44516
Predicted protein (208 aa)
       
      0.540
Phatr20135
Predicted protein (690 aa)
       
      0.540
Phatr13053
Predicted protein (725 aa)
       
      0.540
Phatr12309
Predicted protein (134 aa)
       
      0.540
Phatr14176
Predicted protein (438 aa)
   
        0.530
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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