STRINGSTRING
Phatr18337 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18337" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18337Predicted protein (596 aa)    
Predicted Functional Partners:
AAT_2
Aspartate aminotransferase (426 aa)
     
 
  0.952
AAT_1
Aspartate transaminase (435 aa)
     
 
  0.952
Phatr21116
Argininosuccinate synthase (418 aa)
     
  0.944
Phatr22113
Bifunctional aspartokinase (870 aa)
   
 
  0.920
Phatr26256
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (By similarity) (526 aa)
     
 
  0.909
Phatr20905
Predicted protein (332 aa)
         
  0.908
Phatr44003
Predicted protein (354 aa)
         
    0.900
Phatr52316
Aspartokinase (468 aa)
   
 
  0.878
Phatr44902
Predicted protein (382 aa)
     
 
  0.837
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
   
  0.772
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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