STRINGSTRING
Phatr18345 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18345" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18345Predicted protein (348 aa)    
Predicted Functional Partners:
Phatr24772
Predicted protein (801 aa)
   
 
  0.652
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.574
Phatr54355
Carboxylyase (667 aa)
       
  0.546
Phatr37341
Annotation not available (628 aa)
       
  0.546
Phatr14401
Isocitrate lyase (539 aa)
   
     
  0.521
Phatr30145
Citrate synthase (471 aa)
   
   
  0.491
Phatr13232
Predicted protein (505 aa)
       
      0.489
PHATR_1155
Predicted protein (509 aa)
       
      0.489
ACC2
Biotin carboxylase (2282 aa)
   
   
  0.463
Phatr51830
Methylmalonyl-coa mutase (719 aa)
         
  0.421
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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