STRINGSTRING
Phatr1840 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr1840" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1840Predicted protein (503 aa)    
Predicted Functional Partners:
Phatr47067
Predicted protein (1237 aa)
 
  0.999
Phatr17772
Predicted protein (1313 aa)
 
  0.998
Phatr25204
Predicted protein (598 aa)
 
  0.991
Phatr23429
Predicted protein (615 aa)
 
 
  0.925
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
   
  0.896
Phatr18080
Phosphoribosylaminoimidazole-succinocarboxamide synthase (268 aa)
   
  0.878
Phatr18087
Adenylosuccinate lyase (499 aa)
   
 
  0.818
CPS-II
Predicted protein (1542 aa)
   
   
  0.804
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
   
   
  0.804
Phatr27735
Predicted protein (538 aa)
   
   
  0.763
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (3%) [HD]